STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT04079.1PFAM: regulatory protein TetR; KEGG: bar:GBAA4721 TetR family transcriptional regulator. (228 aa)    
Predicted Functional Partners:
ACT03811.1
PFAM: alpha amylase catalytic region; S-layer domain protein; glycoside hydrolase family 13 domain protein; Fibronectin type III domain protein; SMART: alpha amylase catalytic sub domain; Fibronectin type III domain protein; alpha amylase all-beta; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 13 family.
  
     0.668
ACT04078.1
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_1664 EmrB/QacA family drug resistance transporter.
     
 0.508
ACT02920.1
KEGG: eba:ebA6578 hypothetical protein.
  
     0.462
ACT01695.1
Putative two component transcriptional regulator, winged helix family; PFAM: Forkhead-associated protein; transcriptional regulator domain protein; SMART: Forkhead-associated protein; KEGG: bha:BH1777 hypothetical protein.
  
   
 0.415
ACT01405.1
PFAM: WD40 domain protein beta Propeller; KEGG: bar:GBAA4583 TolB domain-containing protein.
  
     0.406
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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