STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQZ88260.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)    
Predicted Functional Partners:
OQZ88379.1
Cell wall synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.664
OQZ91784.1
RNA polymerase subunit sigma; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this protein is involved in expression of ribosome-associated gene products in stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
   
    0.623
OQZ90257.1
PirG; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.623
OQZ88259.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.617
OQZ91160.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.609
OQZ91950.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.538
OQZ88258.1
Quercetin 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family.
     
 0.533
OQZ89973.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.470
OQZ88647.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.410
OQZ88257.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.403
Your Current Organism:
Mycobacterium alsense
NCBI taxonomy Id: 324058
Other names: CCUG 56586, DSM 45230, M. alsense, Mycobacterium alsense Tortoli et al. 2016, Mycobacterium alsiense, Mycobacterium sp. 1137317.9, Mycobacterium sp. E2978
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.