Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OQZ87997.1Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)    
Predicted Functional Partners:
OQZ87998.1
benzoylsuccinyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
OQZ93137.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.951
OQZ93143.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.827
OQZ93958.1
3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.821
OQZ93453.1
Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.800
OQZ88605.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  0.797
OQZ89810.1
Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.793
OQZ91016.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.739
OQZ89984.1
Nucleic acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.729
OQZ92134.1
Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.724
Your Current Organism:
Mycobacterium alsense
NCBI taxonomy Id: 324058
Other names: CCUG 56586, DSM 45230, M. alsense, Mycobacterium alsense Tortoli et al. 2016, Mycobacterium alsiense, Mycobacterium sp. 1137317.9, Mycobacterium sp. E2978
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