STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0015PFAM: permease; KEGG: rca:Rcas_3620 permease. (362 aa)    
Predicted Functional Partners:
Caur_0014
TIGRFAM: redox-active disulfide protein 2; KEGG: rca:Rcas_3619 redox-active disulfide protein 2.
 
  
 0.943
Caur_0013
PFAM: regulatory protein ArsR; KEGG: rca:Rcas_3618 transcriptional regulator, ArsR family.
  
  
 0.623
trmB
Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.613
Caur_0979
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: net:Neut_0014 twin-arginine translocation pathway signal.
  
  
 0.585
Caur_1570
TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: sth:STH741 major anaerobically induced outer membrane protein.
  
  
 0.585
Caur_1324
PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein ArsR; KEGG: rca:Rcas_2316 transcriptional regulator, ArsR family.
  
  
 0.482
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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