STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0050KEGG: bbr:BB4888 putative reductase. (98 aa)    
Predicted Functional Partners:
Caur_0049
KEGG: gur:Gura_0093 hypothetical protein.
       0.760
Caur_0047
PFAM: periplasmic binding protein; KEGG: rca:Rcas_2937 periplasmic binding protein.
       0.703
Caur_0048
PFAM: protein of unknown function DUF547; KEGG: gur:Gura_3347 protein of unknown function DUF547.
       0.703
Caur_0046
PFAM: protein of unknown function DUF407; KEGG: rrs:RoseRS_2616 protein of unknown function DUF407.
       0.646
Caur_0051
KEGG: rca:Rcas_2036 hypothetical protein.
       0.547
Caur_0045
KEGG: rrs:RoseRS_2617 hypothetical protein.
       0.506
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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