STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0106PFAM: lipopolysaccharide biosynthesis protein; KEGG: rca:Rcas_3666 lipopolysaccharide biosynthesis protein. (210 aa)    
Predicted Functional Partners:
Caur_0107
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rrs:RoseRS_4043 lipopolysaccharide biosynthesis protein.
       0.819
Caur_0108
TIGRFAM: capsular exopolysaccharide family; KEGG: rca:Rcas_3668 non-specific protein-tyrosine kinase.
  
 
 0.769
Caur_1054
KEGG: rca:Rcas_1950 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.657
Caur_1475
PFAM: sugar transferase; KEGG: plt:Plut_1363 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.646
Caur_1504
KEGG: rca:Rcas_4266 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.646
Caur_3257
KEGG: rrs:RoseRS_3578 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.646
Caur_3791
KEGG: rrs:RoseRS_1134 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.646
Caur_0105
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_4045 glycosyl transferase, group 1.
  
    0.630
Caur_2118
Capsular exopolysaccharide family; KEGG: rca:Rcas_1353 non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
 
 0.474
Caur_0907
KEGG: rrs:RoseRS_2201 ATPase involved in chromosome partitioning-like protein.
  
 
 0.433
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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