Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
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Co-expression
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[Homology]
Score
Caur_0127Hypothetical protein. (362 aa)    
Predicted Functional Partners:
Caur_0128
KEGG: plt:Plut_0266 hypothetical protein.
      
0.673
cmsA
Bacteriochlorophyll C binding protein; Component of the photosynthetic apparatus. The light harvesting B740 complex binds bacteriochlorophyll c.
       0.627
Caur_0129
PFAM: Anion-transporting ATPase; KEGG: cch:Cag_1412 anion-transporting ATPase.
       0.550
Caur_0125
Arsenite-activated ATPase ArsA; KEGG: plt:Plut_1173 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase.
       0.451
Caur_0130
PFAM: Anion-transporting ATPase; KEGG: rca:Rcas_0926 ATPase involved in chromosome partitioning-like protein.
       0.415
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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