Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0190KEGG: rrs:RoseRS_1536 hypothetical protein. (303 aa)    
Predicted Functional Partners:
Caur_2823
KEGG: rrs:RoseRS_1532 PT repeat-containing protein.
 
     0.453
Caur_0399
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_0024 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.428
Caur_0646
Hypothetical protein.
  
 
 0.428
Caur_0925
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_4389 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.428
Caur_1494
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_0988 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.428
Caur_1499
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_0988 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.428
Caur_1860
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1760 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.428
Caur_1867
KEGG: rca:Rcas_3349 hypothetical protein.
  
 
 0.428
Caur_2678
KEGG: rrs:RoseRS_1850 hypothetical protein.
  
 
 0.428
Caur_3114
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rca:Rcas_0988 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.428
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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