STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0194PFAM: ABC-3 protein; KEGG: rca:Rcas_1721 transcriptional regulator, MarR family. (367 aa)    
Predicted Functional Partners:
Caur_0196
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3069 ABC transporter related.
 0.998
Caur_0197
PFAM: periplasmic solute binding protein; KEGG: rrs:RoseRS_3070 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 0.997
Caur_1994
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcl:ABC3960 Mn2+/Zn2+ ABC transporter ATP-binding protein.
 0.989
Caur_0195
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: rca:Rcas_1722 ABC-3 protein.
 
  
 
0.965
Caur_1993
PFAM: periplasmic solute binding protein; KEGG: pla:Plav_2227 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.950
Caur_1995
PFAM: ABC-3 protein; KEGG: rca:Rcas_1589 ABC-3 protein.
  
  
 
0.502
Caur_3239
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rca:Rcas_1456 polar amino acid ABC transporter, inner membrane subunit.
   
 
 0.447
Caur_0100
FeoA family protein; PFAM: iron dependent repressor; FeoA family protein; KEGG: rca:Rcas_3322 iron (metal) dependent repressor, DtxR family.
  
  
 0.440
Caur_2431
PFAM: iron dependent repressor; KEGG: rrs:RoseRS_3574 iron dependent repressor.
  
  
 0.440
Caur_1714
PFAM: ferric-uptake regulator; KEGG: rrs:RoseRS_1293 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.428
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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