Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
Caur_0255KEGG: rrs:RoseRS_2443 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Caur_0254
KEGG: rca:Rcas_2220 hypothetical protein.
 
     0.957
Caur_0252
KEGG: rrs:RoseRS_2440 hypothetical protein.
 
     0.941
Caur_0251
KEGG: rrs:RoseRS_2439 hypothetical protein.
 
     0.918
Caur_0253
Hypothetical protein; KEGG: rca:Rcas_2219 putative FHA domain containing protein.
 
     0.912
Caur_3049
KEGG: rrs:RoseRS_0521 hypothetical protein.
 
     0.810
Caur_2637
KEGG: rrs:RoseRS_4324 hypothetical protein.
  
     0.722
Caur_0711
KEGG: rrs:RoseRS_2657 hypothetical protein.
  
     0.721
Caur_2644
KEGG: rca:Rcas_0803 N-acetylglucosamine-1-phosphate uridyltransferase-like protein.
  
     0.719
Caur_1578
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1146 tetratricopeptide TPR_2 repeat protein.
  
     0.708
Caur_0695
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0774 TPR repeat-containing protein.
  
     0.707
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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