STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0312PFAM: periplasmic binding protein; KEGG: rrs:RoseRS_3086 periplasmic binding protein. (435 aa)    
Predicted Functional Partners:
Caur_0315
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3089 ABC transporter related.
 
 
 0.975
Caur_0314
PFAM: transport system permease protein; KEGG: rrs:RoseRS_3088 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.966
Caur_0313
KEGG: rrs:RoseRS_3087 ferredoxin-like protein.
       0.770
Caur_0316
KEGG: rrs:RoseRS_3090 hypothetical protein.
       0.736
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
  
 
 0.635
Caur_3834
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0416 ABC transporter related.
  
 
 0.635
Caur_1459
PFAM: Methyltransferase type 11; KEGG: fjo:Fjoh_1761 methyltransferase type 11.
  
 
   0.581
Caur_2429
PFAM: transport system permease protein; KEGG: rca:Rcas_4371 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.539
Caur_3831
PFAM: transport system permease protein; KEGG: rxy:Rxyl_0414 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.539
Caur_3833
PFAM: transport system permease protein; KEGG: ana:all2585 iron(III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.539
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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