STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0337PFAM: band 7 protein; KEGG: rrs:RoseRS_3855 band 7 protein. (341 aa)    
Predicted Functional Partners:
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.869
Caur_3171
PFAM: peptidase M41; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_1848 AAA ATPase, central domain protein; Belongs to the AAA ATPase family.
   
 0.869
Caur_0338
PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_1513 ribonuclease III.
   
   0.759
Caur_2630
PFAM: peptidase M16 domain protein; KEGG: rca:Rcas_1147 peptidase M16 domain protein.
  
 0.547
Caur_0757
PFAM: Rhomboid family protein; KEGG: rca:Rcas_1097 rhomboid family protein.
   
 0.464
Caur_2997
PFAM: Rhomboid family protein; KEGG: rca:Rcas_2942 rhomboid family protein.
   
 0.464
Caur_3477
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rca:Rcas_3881 hypothetical protein.
   
 0.464
Caur_1236
KEGG: rca:Rcas_3603 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: Miro domain protein; Ras family protein; SMART: Ras small GTPase, Ras type; Ras small GTPase, Rho type; Ras small GTPase, Rab type.
   
 0.457
Caur_2269
KEGG: rca:Rcas_3297 hypothetical protein.
   
 0.457
Caur_1789
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28481 hypothetical protein.
  
 
 0.435
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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