STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0352PFAM: RDD domain containing protein; KEGG: rca:Rcas_3447 RDD domain containing protein. (267 aa)    
Predicted Functional Partners:
Caur_0507
PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_3801 protein of unknown function DUF95, transmembrane.
    0.967
Caur_3910
PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_1836 protein of unknown function DUF58.
 
    0.798
Caur_0353
PFAM: Phosphoglycerate mutase; KEGG: rca:Rcas_3445 phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
  
    0.792
Caur_3404
KEGG: rrs:RoseRS_1832 hypothetical protein.
  
     0.681
Caur_1269
PFAM: von Willebrand factor type A; KEGG: rca:Rcas_2575 von Willebrand factor type A.
 
  
 0.473
Caur_2651
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2768 von Willebrand factor, type A.
  
     0.469
Caur_0823
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_1075 protein of unknown function DUF214.
  
  
 0.437
Caur_2998
PFAM: protein of unknown function DUF114; KEGG: rca:Rcas_2943 protein of unknown function DUF114.
  
  
 0.400
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.