STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0485KEGG: rca:Rcas_3041 exonuclease-like protein. (168 aa)    
Predicted Functional Partners:
Caur_3024
KEGG: rca:Rcas_0157 hypothetical protein.
  
     0.675
Caur_0486
PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: rrs:RoseRS_2631 protein kinase.
       0.667
Caur_0484
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: rca:Rcas_3042 inosine/uridine-preferring nucleoside hydrolase.
       0.513
Caur_0472
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: rca:Rcas_1521 putative regulatory protein, FmdB family.
  
     0.511
Caur_1383
PAS sensor protein; KEGG: rrs:RoseRS_3026 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
     0.503
Caur_0805
PFAM: transcriptional regulator TrmB; KEGG: sus:Acid_1756 transcriptional regulator, TrmB.
  
     0.495
Caur_3038
KEGG: rca:Rcas_3664 hypothetical protein.
  
     0.459
Caur_0778
Helicase; KEGG: rrs:RoseRS_1623 helicase.
 
  
 0.435
Caur_2529
KEGG: rrs:RoseRS_2034 hypothetical protein.
  
     0.432
Caur_0436
TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rca:Rcas_0087 FolC bifunctional protein; Belongs to the folylpolyglutamate synthase family.
  
     0.431
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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