STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0505PFAM: UbiA prenyltransferase; KEGG: rrs:RoseRS_2248 UbiA prenyltransferase; Belongs to the UbiA prenyltransferase family. (317 aa)    
Predicted Functional Partners:
Caur_0506
PFAM: aspartate/glutamate/uridylate kinase; KEGG: rca:Rcas_4059 aspartate/glutamate/uridylate kinase.
       0.825
Caur_0507
PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_3801 protein of unknown function DUF95, transmembrane.
       0.825
Caur_3608
PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_0481 conserved hypothetical protein 374.
     0.705
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
  0.653
Caur_1232
KEGG: kra:Krad_3884 hypothetical protein.
 
  
 0.650
Caur_0536
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_0088 amine oxidase.
 
     0.513
Caur_0117
KEGG: mba:Mbar_A1776 magnesium-chelatase subunit; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A; SMART: AAA ATPase.
  
  
 0.445
Caur_0420
Magnesium chelatase ATPase subunit D; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.445
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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