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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0561TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_1979 CRISPR-associated RAMP protein, Csm3 family. (272 aa)    
Predicted Functional Partners:
Caur_0560
TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: rca:Rcas_1980 CRISPR-associated RAMP protein, Csm4 family.
 
 
 0.995
Caur_0562
TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: protein of unknown function DUF310; KEGG: rca:Rcas_1978 CRISPR-associated protein, Csm2 family.
 
 
 0.995
Caur_0559
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: rca:Rcas_1981 CRISPR-associated RAMP protein, Csm5 family.
 
 
 0.994
Caur_0563
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: rca:Rcas_1977 CRISPR-associated protein, Csm1 family.
 
 
 0.978
Caur_2272
KEGG: swo:Swol_2528 hypothetical protein.
 
 
 0.801
Caur_2291
KEGG: rrs:RoseRS_1438 hypothetical protein.
 
 
 0.787
Caur_0558
KEGG: rca:Rcas_1982 hypothetical protein.
       0.745
Caur_0557
KEGG: rca:Rcas_1982 hypothetical protein.
       0.732
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.700
Caur_0556
TIGRFAM: CRISPR-associated protein Cas6; KEGG: rca:Rcas_1983 hypothetical protein.
 
   
 0.700
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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