STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Caur_0665TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: rrs:RoseRS_2141 small GTP-binding protein. (176 aa)    
Predicted Functional Partners:
Caur_0276
PFAM: Roadblock/LC7 family protein; KEGG: rrs:RoseRS_0746 roadblock/LC7 family protein.
 
 
 0.970
Caur_0696
PFAM: Roadblock/LC7 family protein; KEGG: rca:Rcas_0033 roadblock/LC7 family protein.
 
 
 0.947
Caur_2062
PFAM: Roadblock/LC7 family protein; KEGG: mbn:Mboo_1908 roadblock/LC7 family protein.
 
 
 0.916
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
  
 0.883
Caur_0520
KEGG: mxa:MXAN_5770 hypothetical protein.
  
 
 0.875
Caur_2061
PFAM: Roadblock/LC7 family protein; KEGG: rca:Rcas_4340 roadblock/LC7 family protein.
  
 
 0.875
Caur_0666
KEGG: rrs:RoseRS_2140 hypothetical protein.
 
     0.833
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
   
 
 0.746
Caur_0667
PFAM: protein of unknown function DUF1385; KEGG: rca:Rcas_1732 protein of unknown function DUF1385.
       0.579
Caur_1589
PFAM: protein of unknown function DUF95 transmembrane; KEGG: rca:Rcas_1668 protein of unknown function DUF95 transmembrane.
  
     0.555
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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