STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0778Helicase; KEGG: rrs:RoseRS_1623 helicase. (1007 aa)    
Predicted Functional Partners:
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
   
 
 0.952
ftsQ
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
 
 
 
 0.933
Caur_0251
KEGG: rrs:RoseRS_2439 hypothetical protein.
 
 
 
 0.928
Caur_0171
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rca:Rcas_0508 peptidoglycan glycosyltransferase.
   
 
 0.877
Caur_1901
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rrs:RoseRS_1948 penicillin-binding protein, 1A family.
   
 
 0.877
Caur_0777
KEGG: rrs:RoseRS_3491 response regulator receiver and SARP domain protein.
       0.790
Caur_2800
PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_3504 allergen V5/TPX-1 family protein.
 
  
 0.772
Caur_1578
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1146 tetratricopeptide TPR_2 repeat protein.
 
     0.767
Caur_2646
PAS sensor protein; KEGG: rca:Rcas_0805 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.760
Caur_0430
TIGRFAM: conserved repeat domain protein; KEGG: rca:Rcas_1728 conserved repeat domain.
  
     0.753
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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