STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0818KEGG: son:SO_1458 hypothetical protein. (405 aa)    
Predicted Functional Partners:
Caur_0819
KEGG: son:SO_1459 hypothetical protein.
       0.790
Caur_1900
SMART: AAA ATPase; KEGG: rca:Rcas_1107 AAA ATPase.
  
     0.507
Caur_2701
KEGG: rpb:RPB_2979 hypothetical protein.
 
     0.503
Caur_2351
PFAM: WD-40 repeat protein; SMART: serine/threonine protein kinase; KEGG: rca:Rcas_3489 serine/threonine protein kinase with WD40 repeats.
  
     0.463
Caur_2503
PFAM: WD-40 repeat protein; SMP-30/Gluconolaconase/LRE domain protein; KEGG: rrs:RoseRS_0892 WD-40 repeat protein.
  
     0.459
ribX
Binding-protein-dependent transport systems inner membrane component; Part of an ABC transporter complex that transports riboflavin into the cell; Belongs to the binding-protein-dependent transport system permease family.
 
     0.446
Caur_0896
PFAM: protein of unknown function DUF323; KEGG: rrs:RoseRS_2919 protein of unknown function DUF323.
 
     0.445
Caur_2875
PFAM: WD-40 repeat protein; KEGG: mac:MA2525 WD40-repeat containing protein.
  
     0.438
ribY
NMT1/THI5 like domain protein; Part of an ABC transporter complex that transports riboflavin into the cell. Binds riboflavin. Belongs to the NMT1 family.
       0.419
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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