STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0834KEGG: rrs:RoseRS_1243 hypothetical protein. (534 aa)    
Predicted Functional Partners:
Caur_1813
PFAM: restriction modification system DNA specificity domain; KEGG: bte:BTH_I2742 type I restriction-modification system specificity determinant.
  
 
 0.953
Caur_0835
KEGG: rrs:RoseRS_1245 NB-ARC domain protein.
 
     0.837
Caur_1816
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
  
 0.814
Caur_2553
PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_0614 protein of unknown function DUF820.
  
     0.740
Caur_2432
PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_0614 protein of unknown function DUF820.
  
     0.733
Caur_3879
PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_0614 protein of unknown function DUF820.
  
     0.726
Caur_3769
KEGG: rrs:RoseRS_3863 laminin G, sub domain 2.
  
     0.719
Caur_3504
SMART: LamG domain protein jellyroll fold domain protein; KEGG: rca:Rcas_2574 LamG domain protein jellyroll fold domain protein.
  
     0.707
Caur_1818
PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_2294 protein of unknown function DUF820.
  
     0.701
Caur_1953
KEGG: rca:Rcas_1115 hypothetical protein.
  
     0.695
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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