STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0845PFAM: cytochrome c class I; KEGG: rca:Rcas_2631 cytochrome c class I. (183 aa)    
Predicted Functional Partners:
Caur_1210
TIGRFAM: arsenite oxidase, small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_3085 twin-arginine translocation pathway signal.
  
 
 0.959
Caur_2143
PFAM: cytochrome c oxidase subunit III; KEGG: sus:Acid_0499 cytochrome c oxidase, subunit III.
  
 
 0.949
Caur_0622
KEGG: rca:Rcas_1463 Fe-S-cluster-containing hydrogenase components 1-like protein.
  
 
 0.943
Caur_2141
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.932
Caur_2136
KEGG: rrs:RoseRS_4140 Fe-S-cluster-containing hydrogenase components 1-like protein.
  
 
 0.913
Caur_1185
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rrs:RoseRS_3542 NADH dehydrogenase (quinone).
   
 
 0.878
Caur_0623
PFAM: Polysulphide reductase NrfD; KEGG: rca:Rcas_1464 polysulphide reductase NrfD.
   
 
 0.826
Caur_3002
KEGG: rrs:RoseRS_0527 hypothetical protein.
   
 
 0.816
Caur_2425
PFAM: cytochrome c oxidase subunit II; KEGG: rca:Rcas_1574 cytochrome c oxidase subunit II.
  
 
 0.814
Caur_0626
KEGG: sus:Acid_0494 hypothetical protein.
   
 
 0.808
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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