STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0889PFAM: glycosyl transferase family 2; KEGG: pth:PTH_0470 glycosyltransferases, probably involved in cell wall biogenesis. (401 aa)    
Predicted Functional Partners:
Caur_0891
PFAM: glycosyl transferase group 1; KEGG: cgt:cgR_0028 hypothetical protein.
     
 0.829
Caur_0890
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_4227 glycosyl transferase, group 1.
       0.818
Caur_3274
PAS sensor protein; KEGG: sfu:Sfum_0942 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
 
 
 0.659
Caur_1264
Hypothetical protein.
  
  
 0.629
Caur_1789
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28481 hypothetical protein.
  
 
 0.613
Caur_3534
Diguanylate cyclase; KEGG: ava:Ava_2710 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.597
Caur_1422
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rrs:RoseRS_0116 cobyrinic acid a,c-diamide synthase.
  
 
 0.548
Caur_3515
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rca:Rcas_0446 cobyrinic acid ac-diamide synthase.
  
 
 0.548
Caur_0652
PFAM: Glycosyltransferase 28 domain; Monogalactosyldiacylglycerol synthase; KEGG: gvi:glr3229 hypothetical protein.
 
   
 0.526
Caur_2958
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0666 protein kinase.
  
 
 0.512
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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