STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0908PFAM: type II secretion system protein E; KEGG: rrs:RoseRS_2200 type II secretion system protein E. (401 aa)    
Predicted Functional Partners:
Caur_0511
PFAM: type II secretion system protein; KEGG: rrs:RoseRS_1275 type II secretion system protein.
 
  
 0.939
Caur_0510
PFAM: type II secretion system protein; KEGG: rca:Rcas_1680 type II secretion system protein.
 
  
 0.917
Caur_3799
PFAM: response regulator receiver; Cobyrinic acid ac-diamide synthase; KEGG: rca:Rcas_1683 response regulator receiver protein.
  
 0.728
Caur_0509
PFAM: protein of unknown function DUF192; KEGG: rca:Rcas_1679 protein of unknown function DUF192.
 
     0.609
Caur_3903
PFAM: TadE family protein; KEGG: rca:Rcas_1688 TadE family protein.
 
  
 0.597
Caur_0907
KEGG: rrs:RoseRS_2201 ATPase involved in chromosome partitioning-like protein.
       0.580
Caur_1302
PFAM: Flp/Fap pilin component; KEGG: rca:Rcas_1121 Flp/Fap pilin component.
 
  
 0.518
Caur_0909
PFAM: SAF domain protein; KEGG: rca:Rcas_1407 SAF domain protein.
  
  
 0.504
Caur_0514
PFAM: SAF domain protein; KEGG: rrs:RoseRS_1272 SAF domain.
  
  
 0.498
Caur_3905
SMART: von Willebrand factor type A; KEGG: rrs:RoseRS_1269 von Willebrand factor, type A.
  
  
 0.438
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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