Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Caur_0909PFAM: SAF domain protein; KEGG: rca:Rcas_1407 SAF domain protein. (269 aa)    
Predicted Functional Partners:
Caur_0911
PFAM: TadE family protein; KEGG: rca:Rcas_1409 TadE family protein.
  
  
 0.877
Caur_3799
PFAM: response regulator receiver; Cobyrinic acid ac-diamide synthase; KEGG: rca:Rcas_1683 response regulator receiver protein.
  
  
 0.858
Caur_0511
PFAM: type II secretion system protein; KEGG: rrs:RoseRS_1275 type II secretion system protein.
  
  
 0.806
Caur_1302
PFAM: Flp/Fap pilin component; KEGG: rca:Rcas_1121 Flp/Fap pilin component.
  
  
 0.799
Caur_0510
PFAM: type II secretion system protein; KEGG: rca:Rcas_1680 type II secretion system protein.
  
  
 0.792
Caur_0910
KEGG: rca:Rcas_1408 hypothetical protein.
       0.705
Caur_3903
PFAM: TadE family protein; KEGG: rca:Rcas_1688 TadE family protein.
  
  
 0.608
Caur_1013
PFAM: cyclic nucleotide-binding; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sfu:Sfum_4027 cyclic nucleotide-binding protein.
   
    0.597
Caur_1060
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_1195 anti-sigma-factor antagonist.
   
    0.522
Caur_3534
Diguanylate cyclase; KEGG: ava:Ava_2710 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
    0.518
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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