STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0923PFAM: phosphatidylserine decarboxylase-related; KEGG: rrs:RoseRS_1290 phosphatidylserine decarboxylase-like protein. (222 aa)    
Predicted Functional Partners:
Caur_0924
PFAM: bifunctional deaminase-reductase domain protein; KEGG: aba:Acid345_2342 bifunctional deaminase-reductase-like.
       0.779
Caur_0925
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_4389 RNA polymerase, sigma-24 subunit, ECF subfamily.
     
 0.645
Caur_0926
KEGG: rca:Rcas_0730 putative transmembrane anti-sigma factor.
       0.560
Caur_1123
KEGG: rrs:RoseRS_3116 Zn-dependent hydrolase of the beta-lactamase fold-like protein.
   
   0.514
Caur_2542
PFAM: beta-lactamase domain protein; KEGG: rca:Rcas_3617 beta-lactamase domain protein; Belongs to the UPF0173 family.
   
   0.514
nnrE
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
  
    0.505
Caur_1190
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rrs:RoseRS_0105 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.505
Caur_1425
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rca:Rcas_0358 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.505
Caur_2813
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rca:Rcas_1944 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.505
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
   0.440
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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