STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Caur_0981PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: rca:Rcas_2690 lytic transglycosylase catalytic. (778 aa)    
Predicted Functional Partners:
Caur_1025
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rrs:RoseRS_3399 PpiC-type peptidyl-prolyl cis-trans isomerase.
 
 
 0.927
Caur_3817
PFAM: protein kinase; Pyrrolo-quinoline quinone; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_1465 protein kinase.
 
 
 0.923
Caur_2912
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gur:Gura_2908 PpiC-type peptidyl-prolyl cis-trans isomerase.
 
 
 0.917
Caur_3062
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dra:DR_1063 peptidyl-prolyl cis-trans isomerase C.
 
 
 0.916
Caur_0537
KEGG: rrs:RoseRS_1123 LamG domain protein jellyroll fold domain protein.
  
 
 0.892
Caur_2916
SMART: Pyrrolo-quinoline quinone; KEGG: rca:Rcas_0596 pyrrolo-quinoline quinone.
  
 
 0.892
Caur_0860
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rso:RSc0784 probable FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)(immunophilin) protein.
   
 
 0.885
Caur_1282
KEGG: rrs:RoseRS_2149 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
 
  
 0.846
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
 
  
 0.836
Caur_1789
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28481 hypothetical protein.
  
  
 0.804
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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