STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0983KEGG: rrs:RoseRS_1231 hypothetical protein. (125 aa)    
Predicted Functional Partners:
Caur_0982
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2510 glycosyl transferase, group 1.
       0.825
Caur_0984
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rrs:RoseRS_2166 ATPase associated with various cellular activities, AAA_5.
       0.825
Caur_0985
PFAM: glycosyl transferase family 2; KEGG: sru:SRU_1194 glycosyl transferase-related protein.
       0.588
Caur_0986
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rca:Rcas_1939 DNA methylase N-4/N-6 domain protein; Belongs to the N(4)/N(6)-methyltransferase family.
       0.548
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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