STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0997PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0267 ABC transporter related. (267 aa)    
Predicted Functional Partners:
Caur_0823
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_1075 protein of unknown function DUF214.
 
 
 0.999
Caur_0996
PFAM: protein of unknown function DUF214; KEGG: rca:Rcas_0266 protein of unknown function DUF214.
 
 0.998
Caur_1169
PFAM: protein of unknown function DUF214; KEGG: rca:Rcas_1126 protein of unknown function DUF214.
 
 0.995
Caur_0998
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rca:Rcas_0268 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.994
Caur_1168
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rca:Rcas_1203 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.979
Caur_3402
PFAM: secretion protein HlyD family protein; KEGG: rca:Rcas_0268 efflux transporter, RND family, MFP subunit.
 
 
 0.969
Caur_2119
PFAM: secretion protein HlyD family protein; KEGG: rrs:RoseRS_3638 secretion protein HlyD family protein.
 
 
 0.956
Caur_2574
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
   
0.895
Caur_1363
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_1084 binding-protein-dependent transport systems inner membrane component.
 
 
    0.815
Caur_2782
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gur:Gura_2052 binding-protein-dependent transport systems inner membrane component.
 
 
    0.807
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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