STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1007KEGG: rca:Rcas_3351 hypothetical protein. (577 aa)    
Predicted Functional Partners:
Caur_1006
KEGG: rrs:RoseRS_4062 hypothetical protein.
 
     0.912
Caur_1005
KEGG: rca:Rcas_3353 hypothetical protein.
 
     0.825
Caur_0534
KEGG: rrs:RoseRS_1115 hypothetical protein.
  
     0.757
Caur_1112
PFAM: LmbE family protein; KEGG: rca:Rcas_1416 LmbE family protein.
  
     0.753
Caur_3374
KEGG: rrs:RoseRS_3020 transcriptional regulator-like protein.
  
     0.736
Caur_3381
KEGG: rrs:RoseRS_3020 transcriptional regulator-like protein.
  
     0.725
Caur_3357
PFAM: Forkhead-associated protein; KEGG: rca:Rcas_3047 FHA domain containing protein.
  
     0.695
Caur_2341
PFAM: LmbE family protein; KEGG: rrs:RoseRS_3974 LmbE family protein.
  
     0.694
Caur_3553
KEGG: rrs:RoseRS_0305 hypothetical protein.
  
     0.692
Caur_2967
KEGG: rca:Rcas_0289 hypothetical protein.
  
     0.649
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.