STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1278PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mag:amb3351 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase. (226 aa)    
Predicted Functional Partners:
Caur_1148
PFAM: cyclic nucleotide-binding; KEGG: rrs:RoseRS_4027 cyclic nucleotide-binding protein.
  
     0.764
Caur_1277
KEGG: sus:Acid_2155 hypothetical protein.
       0.705
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.649
Caur_1279
Leucyl aminopeptidase (aminopeptidase T)-like protein; KEGG: rci:RCIX531 predicted aminopeptidase.
       0.637
Caur_1276
Dihydrodipicolinate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; dihydrodipicolinate reductase; homoserine dehydrogenase NAD-binding; KEGG: reh:H16_A3348 dihydrodipicolinate reductase; Belongs to the DapB family.
  
    0.636
Caur_1280
PFAM: peptidase U32; KEGG: sus:Acid_6567 peptidase U32.
  
    0.628
Caur_3295
PFAM: major intrinsic protein; KEGG: rca:Rcas_2043 MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.500
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.494
Caur_1127
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: rrs:RoseRS_1638 putative adenylate/guanylate cyclase.
 
 0.485
Caur_1236
KEGG: rca:Rcas_3603 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: Miro domain protein; Ras family protein; SMART: Ras small GTPase, Ras type; Ras small GTPase, Rho type; Ras small GTPase, Rab type.
   
 0.476
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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