STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1563PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_3153 allergen V5/TPX-1 family protein. (266 aa)    
Predicted Functional Partners:
Caur_1602
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rrs:RoseRS_0927 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.527
Caur_2174
KEGG: bra:BRADO4374 hypothetical protein.
  
    0.500
Caur_2757
Hypothetical protein; KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH.
  
    0.500
Caur_3115
KEGG: dre:100006915 hypothetical protein LOC100006915.
  
    0.500
Caur_0649
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Fibronectin type III domain protein; Kelch repeat protein; KEGG: rca:Rcas_2773 peptidase S8 and S53 subtilisin kexin sedolisin.
  
     0.499
Caur_2635
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rca:Rcas_2773 peptidase S8 and S53 subtilisin kexin sedolisin.
  
     0.492
Caur_1909
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: gvi:glr3087 hypothetical protein.
 
     0.444
Caur_0932
PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_2977 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
   
   0.427
Caur_1083
PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_0625 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
   
   0.427
Caur_3638
PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_4108 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
   
   0.427
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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