STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1685KEGG: rca:Rcas_0802 4-vinyl reductase 4VR. (225 aa)    
Predicted Functional Partners:
Caur_1686
PFAM: pentapeptide repeat protein; KEGG: tel:tll0709 hypothetical protein.
       0.766
Caur_1831
KEGG: rrs:RoseRS_4481 hypothetical protein.
  
  
 0.532
Caur_2008
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sus:Acid_6427 radical SAM domain protein.
  
  
 0.532
Caur_3335
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_3579 radical SAM domain protein.
  
  
 0.532
Caur_3676
KEGG: rca:Rcas_1584 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
  
 0.532
Caur_3781
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rrs:RoseRS_4225 radical SAM domain protein.
  
  
 0.532
Caur_2632
PFAM: peptidase M19 renal dipeptidase; KEGG: rca:Rcas_3312 membrane dipeptidase.
  
  
 0.411
Caur_1684
PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_1645 extracellular solute-binding protein, family 1.
       0.409
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.