STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
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[Homology]
Score
Caur_1776Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dsy:DSY0353 hypothetical protein. (419 aa)    
Predicted Functional Partners:
Caur_0031
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rca:Rcas_3221 response regulator receiver modulated diguanylate cyclase.
     0.958
Caur_2001
PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_4344 two component transcriptional regulator, winged helix family.
 
   0.881
Caur_0410
TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: rca:Rcas_3604 putative PAS/PAC sensor protein.
 
 0.879
Caur_2069
PFAM: response regulator receiver; KEGG: reh:H16_B2354 signal transduction histidine kinase containing two receiver domains (hybrid).
 
 
 0.849
Caur_0109
PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_1176 two component transcriptional regulator, winged helix family.
 
   0.837
Caur_1771
PFAM: response regulator receiver; KEGG: rrs:RoseRS_3877 response regulator receiver protein.
 
   0.816
Caur_1469
PFAM: response regulator receiver; KEGG: azo:azo3457 putative pilus biogenese protein.
 
 
 
 0.815
Caur_3854
PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_0960 two component transcriptional regulator, winged helix family.
 
   0.814
Caur_1668
PFAM: response regulator receiver; KEGG: rrs:RoseRS_0035 response regulator receiver protein.
  
   0.808
Caur_2815
PFAM: response regulator receiver; KEGG: mbu:Mbur_0695 response regulator receiver.
  
   0.808
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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