STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1809PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rrs:RoseRS_4457 protein of unknown function DUF224, cysteine-rich region domain protein. (719 aa)    
Predicted Functional Partners:
Caur_3919
KEGG: rru:Rru_A0614 hypothetical protein.
  
  
 0.658
Caur_3221
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rca:Rcas_1887 3-hydroxyacyl-CoA dehydrogenase NAD-binding.
 
  
 0.620
Caur_0826
PFAM: protein of unknown function DUF162; KEGG: rca:Rcas_1855 protein of unknown function DUF162.
  
 
 0.612
Caur_0214
PFAM: protein of unknown function DUF422; KEGG: rrs:RoseRS_2706 protein of unknown function DUF422.
      
 0.595
Caur_2080
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rca:Rcas_4052 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.476
Caur_0181
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rrs:RoseRS_4179 protein of unknown function DUF224, cysteine-rich region domain protein.
  
   
0.470
Caur_3546
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rrs:RoseRS_2299 electron transfer flavoprotein beta-subunit.
  
 0.464
Caur_1991
PFAM: protein of unknown function UPF0079; KEGG: rca:Rcas_0713 protein of unknown function UPF0079.
      
 0.440
Caur_2060
KEGG: rca:Rcas_4339 hypothetical protein.
      
 0.440
Caur_0054
PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1957; KEGG: rrs:RoseRS_3734 glycoside hydrolase, family 57; Belongs to the glycosyl hydrolase 57 family.
      
 0.439
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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