STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1821PFAM: YceI family protein; KEGG: rrs:RoseRS_4326 YceI family protein; Belongs to the UPF0312 family. (182 aa)    
Predicted Functional Partners:
Caur_1820
PFAM: OsmC family protein; KEGG: neu:NE1136 putative redox protein.
 
     0.543
Caur_1822
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: mav:MAV_4144 hypothetical protein.
       0.497
Caur_1823
PFAM: DSBA oxidoreductase; KEGG: rrs:RoseRS_1292 DsbA oxidoreductase.
  
   0.435
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.