STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1953KEGG: rca:Rcas_1115 hypothetical protein. (687 aa)    
Predicted Functional Partners:
Caur_1954
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_3768 cellulose synthase (UDP-forming).
 
 
 0.906
Caur_1952
Diguanylate cyclase; KEGG: maq:Maqu_3442 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
       0.790
Caur_3504
SMART: LamG domain protein jellyroll fold domain protein; KEGG: rca:Rcas_2574 LamG domain protein jellyroll fold domain protein.
  
   0.788
Caur_3913
KEGG: rca:Rcas_2246 hypothetical protein.
  
   0.781
Caur_3769
KEGG: rrs:RoseRS_3863 laminin G, sub domain 2.
  
    0.780
Caur_3770
PFAM: Laminin G sub domain 2; SMART: Laminin G; LamG domain protein jellyroll fold domain protein; KEGG: rca:Rcas_0555 laminin G sub domain 2.
  
    0.780
Caur_2432
PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_0614 protein of unknown function DUF820.
  
     0.774
Caur_3879
PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_0614 protein of unknown function DUF820.
  
     0.774
Caur_2553
PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_0614 protein of unknown function DUF820.
  
     0.773
Caur_1818
PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_2294 protein of unknown function DUF820.
  
     0.771
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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