STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2008PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sus:Acid_6427 radical SAM domain protein. (461 aa)    
Predicted Functional Partners:
Caur_2007
PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: ade:Adeh_2440 biotin carboxylase-like.
 
     0.933
Caur_0397
KEGG: rca:Rcas_0802 4-vinyl reductase 4VR.
  
  
 0.633
Caur_3677
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR; KEGG: rca:Rcas_1582 bacteriochlorophyll 4-vinyl reductase.
  
  
 0.633
Caur_3919
KEGG: rru:Rru_A0614 hypothetical protein.
  
  
 0.633
Caur_0150
PFAM: PfkB domain protein; KEGG: rrs:RoseRS_3963 PfkB domain protein.
  
     0.556
Caur_1685
KEGG: rca:Rcas_0802 4-vinyl reductase 4VR.
  
  
 0.532
Caur_3254
PFAM: conserved hypothetical protein; KEGG: rca:Rcas_4270 hypothetical protein.
 
    0.519
Caur_2006
Fe(II) trafficking protein YggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.
 
     0.506
Caur_1207
KEGG: pab:PAB0067 DNA helicase related protein.
  
     0.441
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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