STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2119PFAM: secretion protein HlyD family protein; KEGG: rrs:RoseRS_3638 secretion protein HlyD family protein. (506 aa)    
Predicted Functional Partners:
Caur_0823
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_1075 protein of unknown function DUF214.
 
 
 0.987
Caur_0996
PFAM: protein of unknown function DUF214; KEGG: rca:Rcas_0266 protein of unknown function DUF214.
 
 
 0.971
Caur_1169
PFAM: protein of unknown function DUF214; KEGG: rca:Rcas_1126 protein of unknown function DUF214.
 
 
 0.971
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.965
Caur_0997
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0267 ABC transporter related.
 
 
 0.956
Caur_0822
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3212 cyclic nucleotide-binding protein.
 
 
 0.937
Caur_0487
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_3044 ABC transporter related.
  
 
 0.924
Caur_3403
PFAM: acriflavin resistance protein; KEGG: rrs:RoseRS_4303 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.924
Caur_2118
Capsular exopolysaccharide family; KEGG: rca:Rcas_1353 non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
       0.795
Caur_2120
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mgm:Mmc1_2166 NAD-dependent epimerase/dehydratase.
     
 0.728
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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