STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2137KEGG: aba:Acid345_3000 hypothetical protein. (201 aa)    
Predicted Functional Partners:
Caur_0624
KEGG: sus:Acid_0492 conserved hypothetical protein, transmembrane prediction.
 
 0.969
Caur_2138
KEGG: rrs:RoseRS_4139 hypothetical protein.
 
   
 0.958
Caur_2136
KEGG: rrs:RoseRS_4140 Fe-S-cluster-containing hydrogenase components 1-like protein.
 
   
 0.955
Caur_2140
KEGG: sus:Acid_0496 electron transport protein SCO1/SenC.
 
   
 0.935
Caur_2141
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
   
 0.914
Caur_0622
KEGG: rca:Rcas_1463 Fe-S-cluster-containing hydrogenase components 1-like protein.
 
   
 0.830
Caur_2143
PFAM: cytochrome c oxidase subunit III; KEGG: sus:Acid_0499 cytochrome c oxidase, subunit III.
 
   
 0.826
Caur_0621
KEGG: rrs:RoseRS_4139 hypothetical protein.
 
   
 0.800
Caur_2139
KEGG: noc:Noc_1243 hypothetical protein.
     
 0.798
Caur_0623
PFAM: Polysulphide reductase NrfD; KEGG: rca:Rcas_1464 polysulphide reductase NrfD.
 
   
 0.791
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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