STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2140KEGG: sus:Acid_0496 electron transport protein SCO1/SenC. (279 aa)    
Predicted Functional Partners:
Caur_2141
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 0.983
Caur_2138
KEGG: rrs:RoseRS_4139 hypothetical protein.
 
   
 0.949
Caur_2142
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.943
Caur_2137
KEGG: aba:Acid345_3000 hypothetical protein.
 
   
 0.935
Caur_2136
KEGG: rrs:RoseRS_4140 Fe-S-cluster-containing hydrogenase components 1-like protein.
 
   
 0.928
Caur_2143
PFAM: cytochrome c oxidase subunit III; KEGG: sus:Acid_0499 cytochrome c oxidase, subunit III.
 
  
 0.903
Caur_1010
PFAM: cytochrome oxidase assembly; KEGG: rrs:RoseRS_4134 cytochrome oxidase assembly.
 
 0.869
Caur_2425
PFAM: cytochrome c oxidase subunit II; KEGG: rca:Rcas_1574 cytochrome c oxidase subunit II.
 
 0.852
Caur_2139
KEGG: noc:Noc_1243 hypothetical protein.
     
 0.808
Caur_0626
KEGG: sus:Acid_0494 hypothetical protein.
 
   0.806
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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