STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2247PFAM: Integral membrane protein TerC; KEGG: gme:Gmet_1782 integral membrane protein TerC. (251 aa)    
Predicted Functional Partners:
Caur_3824
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rrs:RoseRS_3197 protein of unknown function DUF21.
      0.903
Caur_2196
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rrs:RoseRS_4395 protein of unknown function DUF21.
      0.897
Caur_2248
PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rrs:RoseRS_1974 transcriptional regulator, LysR family.
     
 0.818
Caur_0455
PFAM: Mg2 transporter protein CorA family protein; KEGG: rrs:RoseRS_4558 Mg2+ and Co2+ transporter-like protein.
 
     0.472
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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