Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Caur_2271KEGG: csc:Csac_0484 hypothetical protein. (441 aa)    
Predicted Functional Partners:
Caur_2276
Hypothetical protein.
       0.802
Caur_2274
TIGRFAM: CRISPR-associated RAMP protein, Csx10 family; KEGG: csc:Csac_0486 protein of unknown function DUF324.
       0.793
Caur_2272
KEGG: swo:Swol_2528 hypothetical protein.
       0.790
Caur_2273
KEGG: cth:Cthe_3210 protein of unknown function DUF324.
       0.781
Caur_2275
PFAM: protein of unknown function DUF324; KEGG: swo:Swol_2526 uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)-like protein.
       0.781
Caur_2277
PFAM: RNA binding S1 domain protein; KEGG: csc:Csac_0489 protein of unknown function DUF324.
       0.773
Caur_2270
PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: rca:Rcas_3296 transcriptional regulator, LuxR family.
       0.543
Caur_2269
KEGG: rca:Rcas_3297 hypothetical protein.
       0.404
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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