STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2277PFAM: RNA binding S1 domain protein; KEGG: csc:Csac_0489 protein of unknown function DUF324. (775 aa)    
Predicted Functional Partners:
Caur_2274
TIGRFAM: CRISPR-associated RAMP protein, Csx10 family; KEGG: csc:Csac_0486 protein of unknown function DUF324.
 
     0.946
Caur_2272
KEGG: swo:Swol_2528 hypothetical protein.
 
     0.945
Caur_2273
KEGG: cth:Cthe_3210 protein of unknown function DUF324.
 
     0.945
Caur_2275
PFAM: protein of unknown function DUF324; KEGG: swo:Swol_2526 uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)-like protein.
 
     0.945
Caur_2271
KEGG: csc:Csac_0484 hypothetical protein.
       0.774
Caur_2276
Hypothetical protein.
       0.767
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
   0.722
rpmA
PFAM: ribosomal protein L27; KEGG: rrs:RoseRS_2696 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.716
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.706
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.700
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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