Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Caur_2283TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_2731 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. (730 aa)    
Predicted Functional Partners:
Caur_2282
PFAM: carbohydrate kinase FGGY; KEGG: rca:Rcas_3453 carbohydrate kinase FGGY.
 
  
 0.980
Caur_2285
PFAM: protein of unknown function DUF718; KEGG: rca:Rcas_3456 protein of unknown function DUF718.
 
  
 0.900
Caur_2286
ABC-type sugar transport system periplasmic component-like protein; KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein.
 
   
 0.878
rhaA
PFAM: L-rhamnose isomerase; KEGG: rca:Rcas_3455 L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
   
 0.864
Caur_0361
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: kra:Krad_0118 alpha-L-rhamnosidase.
 
 
 
 0.858
Caur_2290
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: rrs:RoseRS_2724 transcriptional regulator, DeoR family.
 
   
 0.797
Caur_3572
PFAM: alpha-L-rhamnosidase; KEGG: art:Arth_1969 alpha-L-rhamnosidase.
 
     0.726
Caur_0613
PFAM: AMP-dependent synthetase and ligase; Enoyl-CoA hydratase/isomerase; Alcohol dehydrogenase GroES domain protein; KEGG: rrs:RoseRS_3202 AMP-dependent synthetase and ligase.
  
 0.694
Caur_3221
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rca:Rcas_1887 3-hydroxyacyl-CoA dehydrogenase NAD-binding.
 
 0.596
Caur_0945
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: rrs:RoseRS_4167 polysaccharide biosynthesis protein CapD.
      
 0.591
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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