STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2295TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_1442 CRISPR-associated RAMP protein, SSO1426 family. (268 aa)    
Predicted Functional Partners:
Caur_2291
KEGG: rrs:RoseRS_1438 hypothetical protein.
 
 
 0.974
Caur_2298
PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_1445 protein of unknown function DUF324.
 
     0.952
Caur_2293
TIGRFAM: CRISPR-associated RAMP protein, Csx10 family; KEGG: rrs:RoseRS_1440 CRISPR-associated RAMP protein, Csx10 family.
 
    0.951
Caur_0560
TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: rca:Rcas_1980 CRISPR-associated RAMP protein, Csm4 family.
 
 
 0.880
Caur_0562
TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: protein of unknown function DUF310; KEGG: rca:Rcas_1978 CRISPR-associated protein, Csm2 family.
  
 
 0.859
Caur_2296
PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_1443 protein of unknown function DUF324.
 
    
0.859
Caur_2292
PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_1439 protein of unknown function DUF324.
 
    
0.850
Caur_0559
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: rca:Rcas_1981 CRISPR-associated RAMP protein, Csm5 family.
  
 
 0.846
Caur_2294
KEGG: rrs:RoseRS_1441 hypothetical protein.
       0.773
Caur_2297
KEGG: rrs:RoseRS_1444 hypothetical protein.
       0.757
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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