STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2602PFAM: Amidohydrolase 3; KEGG: rca:Rcas_3832 amidohydrolase 3. (534 aa)    
Predicted Functional Partners:
Caur_2601
PFAM: major facilitator superfamily MFS_1; KEGG: rca:Rcas_2484 major facilitator superfamily MFS_1.
       0.737
Caur_3881
PFAM: beta-lactamase; KEGG: rca:Rcas_2208 serine-type D-Ala-D-Ala carboxypeptidase.
 
     0.510
Caur_0103
KEGG: slo:Shew_0499 Xaa-Pro aminopeptidase family enzyme.
  
     0.499
Caur_2603
Hypothetical protein; KEGG: spu:584913 similar to serine active site containing 1.
       0.491
Caur_1068
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; WD40 domain protein beta Propeller; KEGG: rca:Rcas_1375 peptidase S9 prolyl oligopeptidase active site domain protein.
 
     0.488
Caur_3148
PFAM: beta-lactamase; KEGG: mmr:Mmar10_2357 beta-lactamase.
 
     0.421
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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