STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2647PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_4453 alpha/beta hydrolase fold. (278 aa)    
Predicted Functional Partners:
Caur_2646
PAS sensor protein; KEGG: rca:Rcas_0805 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
    0.853
Caur_3713
PFAM: alpha/beta hydrolase fold; KEGG: rca:Rcas_0878 alpha/beta hydrolase fold.
  
     0.774
Caur_1092
PFAM: alpha/beta hydrolase fold; KEGG: bta:505457 biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen).
  
     0.723
Caur_2645
PFAM: response regulator receiver; SMART: GGDEF domain containing protein; KEGG: rrs:RoseRS_4451 response regulator receiver modulated diguanylate cyclase.
       0.567
Caur_0773
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_3822 alpha/beta hydrolase fold.
  
     0.565
Caur_2644
KEGG: rca:Rcas_0803 N-acetylglucosamine-1-phosphate uridyltransferase-like protein.
       0.529
Caur_1287
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_4072 alpha/beta hydrolase fold.
  
     0.503
Caur_0613
PFAM: AMP-dependent synthetase and ligase; Enoyl-CoA hydratase/isomerase; Alcohol dehydrogenase GroES domain protein; KEGG: rrs:RoseRS_3202 AMP-dependent synthetase and ligase.
 
 0.481
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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