STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2766KEGG: rca:Rcas_3800 hypothetical protein. (120 aa)    
Predicted Functional Partners:
Caur_2765
PFAM: nitrogen-fixing NifU domain protein; Rieske [2Fe-2S] domain protein; KEGG: rca:Rcas_3799 nitrogen-fixing NifU domain protein.
       0.827
Caur_2767
KEGG: rca:Rcas_3801 tetratricopeptide TPR_4.
       0.795
Caur_2768
KEGG: rca:Rcas_3803 hydrogenase maturation protease.
       0.791
Caur_2769
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: rca:Rcas_3804 hydrogenase maturation protease.
       0.791
Caur_2764
PFAM: NHL repeat containing protein; KEGG: rca:Rcas_3798 NHL repeat containing protein.
       0.773
Caur_2762
TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rrs:RoseRS_0974 hydrogenase expression/formation protein HypD.
       0.597
Caur_2763
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rca:Rcas_3797 hydrogenase assembly chaperone HypC/HupF.
       0.597
Caur_2770
PFAM: nickel-dependent hydrogenase large subunit; KEGG: msm:MSMEG_2263 hydrogenase-2, large subunit.
       0.570
Caur_2771
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rca:Rcas_3806 NADH ubiquinone oxidoreductase 20 kDa subunit.
       0.539
Caur_2761
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rca:Rcas_3795 hydrogenase expression/formation protein HypE.
       0.504
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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