STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2796PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rca:Rcas_2945 cobalamin synthesis protein P47K. (412 aa)    
Predicted Functional Partners:
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.798
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.797
rpmB-2
PFAM: ribosomal protein L28; KEGG: stp:Strop_2855 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.707
Caur_0197
PFAM: periplasmic solute binding protein; KEGG: rrs:RoseRS_3070 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.643
Caur_1993
PFAM: periplasmic solute binding protein; KEGG: pla:Plav_2227 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.643
Caur_2795
KEGG: rrs:RoseRS_3104 hypothetical protein.
       0.568
Caur_2793
KEGG: oih:OB3431 hypothetical protein.
 
     0.549
rpmB
PFAM: ribosomal protein L28; KEGG: deb:DehaBAV1_1073 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.526
Caur_2566
KEGG: rca:Rcas_0638 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.
     
 0.523
rpmG
PFAM: ribosomal protein L33; KEGG: rca:Rcas_3334 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.507
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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