STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2806PFAM: protein of unknown function DUF87; KEGG: rrs:RoseRS_1701 protein of unknown function DUF87. (534 aa)    
Predicted Functional Partners:
Caur_0435
KEGG: rrs:RoseRS_1491 hypothetical protein.
 
 
 
 0.951
Caur_2245
PFAM: SMC domain protein; KEGG: rrs:RoseRS_0905 SMC domain protein.
 
   
 0.816
Caur_0434
KEGG: rrs:RoseRS_0591 hypothetical protein.
 
     0.815
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.794
Caur_2342
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rca:Rcas_1417 PBS lyase heat domain protein repeat-containing protein.
  
     0.669
Caur_0142
KEGG: ter:Tery_0501 hypothetical protein.
 
     0.667
Caur_2996
KEGG: ter:Tery_0501 hypothetical protein.
 
     0.648
Caur_2233
PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_3233 single-stranded nucleic acid binding R3H domain protein.
  
     0.609
Caur_2807
PFAM: response regulator receiver; KEGG: rme:Rmet_4963 histidine kinase.
       0.520
Caur_3256
PFAM: O-antigen polymerase; KEGG: rca:Rcas_4268 O-antigen polymerase.
  
     0.475
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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